PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g031590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 364aa    MW: 41228.4 Da    PI: 5.727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g031590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17172268296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k l++sdv+++gr+vlpk+ ae    +++ +e++ l ++d  s +sW++k+++  ++ks++yvl+ ++ eFv++ng+++gD+++++  ++++++
  Csa03g031590.1 172 VKLLKNSDVGALGRIVLPKREAEGKlpKLSDKEGIVLEMRDvFSLQSWSFKYKFwsNNKSRMYVLE-NTGEFVRQNGVESGDTLTIY--EDESKN 263
                     6899******************99999777778999999995566*******99888888889999.********************..557777 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ v
  Csa03g031590.1 264 LYFAV 268
                     77765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-20168275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-17170270IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-18170269No hitNo description
PROSITE profilePS508639.812171272IPR003340B3 DNA binding domain
SMARTSM010193.7E-17171272IPR003340B3 DNA binding domain
PfamPF023622.7E-13172267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDNFFPFSSS NANSVQEFAM DANNNLSHIT TMPTLYHHQA EPHHLLYSYP VEQMAAVMNP  60
HQLLYSSDAF PQIPVSQPGS EFCSLVSNPN PCLRTERGGL FLDPTKMARI NRKNAMIRSR  120
NNSSPNSSPD EVVESKRQVM MLNMKNNVQI PVRTDLYPHS TFDNKKLRVL CVKLLKNSDV  180
GALGRIVLPK REAEGKLPKL SDKEGIVLEM RDVFSLQSWS FKYKFWSNNK SRMYVLENTG  240
EFVRQNGVES GDTLTIYEDE SKNLYFAVTK PGRQNGGRGV ESMEVNEMNH YEEIMYDFMP  300
GDEEEASIAM LIGNLNDHYP NPNDLMGLTV DHQHHQAASS LPSVDYPHVG SLDDRVSFDD  360
IVW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499344.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like isoform X1
SwissprotQ1PFR71e-179LEC2_ARATH; B3 domain-containing transcription factor LEC2
TrEMBLR0I4Q70.0R0I4Q7_9BRAS; Uncharacterized protein
STRINGAT1G28300.11e-177(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-161B3 family protein